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Sample GSM1098783 Query DataSets for GSM1098783
Status Public on Sep 01, 2013
Title UT0103M [Expression]
Sample type RNA
Source name Myomet
Organism Homo sapiens
Characteristics gender: Female
tissue: frozen tissue of myometrium with leiomyoma
disease state: myometrium tissue obtained from uterus with leiomyoma
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from tissues using the ISOGEN (NIPPON GENE)
Label biotin
Label protocol Biotinylated cDNA were prepared from 200 ng total RNA with the Ambion WT Expression Kit (Ambion) and Affymetrix GeneChip WT Terminal Labeling Kit (Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Gene 1.0 ST Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
Description myometrium tissue obtained from same case as UT0103L
Data processing The data were analyzed with Partek Genomics Suite 6.5 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
Submission date Mar 15, 2013
Last update date Sep 01, 2013
Contact name Ryo Maekawa
Organization name Yamaguchi University School of Medicine
Department Department of Obstetrics and Gynecology
Street address Minami-Kogushi 1-1-1
City Ube
ZIP/Postal code 755-8505
Country Japan
Platform ID GPL6244
Series (2)
GSE45188 Epigenome analysis of uterin leiomyoma and myometrium with or without leiomyoma [Expression data]
GSE45189 Epigenome analysis of uterin leiomyoma and myometrium with or without leiomyoma

Data table header descriptions
VALUE log2 RMA signal

Data table
7892501 4.08417
7892502 5.51694
7892503 2.9636
7892504 9.37548
7892505 3.94677
7892506 2.22343
7892507 5.42931
7892508 6.06409
7892509 10.9588
7892510 4.0659
7892511 3.8013
7892512 7.57367
7892513 3.24445
7892514 10.3392
7892515 9.94237
7892516 5.02887
7892517 6.22916
7892518 2.53523
7892519 4.9495
7892520 9.53485

Total number of rows: 33297

Table truncated, full table size 516 Kbytes.

Supplementary file Size Download File type/resource
GSM1098783_UT0103M_HuGene-1_0-st-v1_.CEL.gz 4.1 Mb (ftp)(http) CEL
GSM1098783_UT0103M_HuGene-1_0-st-v1_.rma-gene-default.chp.gz 255.1 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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