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Sample GSM1098778 Query DataSets for GSM1098778
Status Public on Sep 01, 2013
Title Myomet0101 [Expression]
Sample type RNA
Source name Control
Organism Homo sapiens
Characteristics gender: Female
tissue: frozen tissue of myometrium without leiomyoma
disease state: normal myometrium
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from tissues using the ISOGEN (NIPPON GENE)
Label biotin
Label protocol Biotinylated cDNA were prepared from 200 ng total RNA with the Ambion WT Expression Kit (Ambion) and Affymetrix GeneChip WT Terminal Labeling Kit (Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Gene 1.0 ST Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
Description control myometrium tissue to compare with myometrium with leiomyoma
Data processing The data were analyzed with Partek Genomics Suite 6.5 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
Submission date Mar 15, 2013
Last update date Sep 01, 2013
Contact name Ryo Maekawa
Organization name Yamaguchi University School of Medicine
Department Department of Obstetrics and Gynecology
Street address Minami-Kogushi 1-1-1
City Ube
ZIP/Postal code 755-8505
Country Japan
Platform ID GPL6244
Series (2)
GSE45188 Epigenome analysis of uterin leiomyoma and myometrium with or without leiomyoma [Expression data]
GSE45189 Epigenome analysis of uterin leiomyoma and myometrium with or without leiomyoma

Data table header descriptions
VALUE log2 RMA signal

Data table
7892501 5.56176
7892502 5.17706
7892503 3.10172
7892504 9.6824
7892505 4.26913
7892506 4.69776
7892507 5.62383
7892508 6.89121
7892509 11.7957
7892510 4.13686
7892511 3.59928
7892512 7.64172
7892513 3.70636
7892514 11.9741
7892515 10.4209
7892516 4.4438
7892517 6.45733
7892518 3.351
7892519 6.0564
7892520 10.0302

Total number of rows: 33297

Table truncated, full table size 516 Kbytes.

Supplementary file Size Download File type/resource
GSM1098778_Myomet0101_HuGene-1_0-st-v1_.CEL.gz 4.2 Mb (ftp)(http) CEL
GSM1098778_Myomet0101_HuGene-1_0-st-v1_.rma-gene-default.chp.gz 255.1 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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