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Sample GSM1098775 Query DataSets for GSM1098775
Status Public on Sep 01, 2013
Title UT0101L [Methylation]
Sample type genomic
Source name Leiomyoma
Organism Homo sapiens
Characteristics gender: Female
tissue: frozen tissue of uterine leiomyoma
disease state: leiomyoma
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from frozen tissue of myometrium and leiomyoma obtained from the woman who underwent hysterectomy using Qiagen DNeasy Kit according to standard instructions
Label Alexa555 and Alexa647
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description uterine leiomyoma obtained from same case as UT0101M
Data processing GenomeStudio Methylation Module
Submission date Mar 15, 2013
Last update date Sep 01, 2013
Contact name Ryo Maekawa
Organization name Yamaguchi University School of Medicine
Department Department of Obstetrics and Gynecology
Street address Minami-Kogushi 1-1-1
City Ube
ZIP/Postal code 755-8505
Country Japan
Platform ID GPL13534
Series (2)
GSE45187 Epigenome analysis of uterin leiomyoma and myometrium with or without leiomyoma [Methylation data]
GSE45189 Epigenome analysis of uterin leiomyoma and myometrium with or without leiomyoma

Data table header descriptions
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.1319531 0
cg00000108 0.9510446 0
cg00000109 0.8219274 0
cg00000165 0.1684853 0
cg00000236 0.6981143 0
cg00000289 0.6514888 0
cg00000292 0.6776685 0
cg00000321 0.49945 0
cg00000363 0.1100785 0
cg00000622 0.01013813 0
cg00000658 0.8059147 0
cg00000714 0.08868511 0
cg00000721 0.9427575 0
cg00000734 0.06822064 0
cg00000769 0.05079358 0
cg00000807 0.7732025 0
cg00000884 0.8486059 0
cg00000905 0.08219203 0
cg00000924 0.429644 0
cg00000948 0.8827159 0

Total number of rows: 485577

Table truncated, full table size 10944 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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