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Sample GSM1096606 Query DataSets for GSM1096606
Status Public on Mar 27, 2013
Title Mouse A-Myb Heterozygous 17.5 dpp Oxidized small RNA
Sample type SRA
 
Source name testes
Organism Mus musculus
Characteristics tissue: testes
developmental stage: 17.5-dpp
strain: mixed 129X1/SvJ x C57BL/6J
genotype: A-Myb-Het
Extracted molecule total RNA
Extraction protocol Small RNA libraries were constructed and sequenced as described (Ghildiyal et al., 2008; Seitz et al., 2008) except that 18–35 nt RNA was isolated and 2S rRNA depletion omitted.
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina HiSeq 2000
 
Description Oxidized small RNA
Data processing genome build: mm9
Small RNA sequence analysis was as described (Li et al., 2009)
Supplementary_files_format_and_content: BED file containing annotations of piRNA-producing genes and csv file containing rpkm values available on Series record
 
Submission date Mar 12, 2013
Last update date May 15, 2019
Contact name Christian Roy
Organization name Umass Med
Street address 364 Plantation St
City Worcester
State/province Massachusetts
ZIP/Postal code 01605
Country USA
 
Platform ID GPL13112
Series (2)
GSE44690 An Ancient Transcription Factor Initiates the Burst of piRNA Production During Early Meiosis in Mouse Testes
GSE45049 An Ancient Transcription Factor Initiates the Burst of piRNA Production During Early Meiosis in Mouse Testes (smallRNA-Seq)
Relations
SRA SRX248886
BioSample SAMN01975566

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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