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Sample GSM1079528 Query DataSets for GSM1079528
Status Public on May 24, 2013
Title PR01-084 4
Sample type genomic
Source name PR01-084_8942297088_R04C02
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 5
experimental batch: 2
cross batch control: yes
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-084_8942297088_R04C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.560761544693492
cg00000108 0.9433252332053
cg00000109 0.914823008849557
cg00000165 0.215417428397319
cg00000236 0.793037245616281
cg00000289 0.75060992138791
cg00000292 0.87217627024397
cg00000321 0.306086370906642
cg00000363 0.386389301634472
cg00000622 0.0389330391829731
cg00000658 0.816061506654607
cg00000714 0.201847934027028
cg00000721 0.929056512248363
cg00000734 0.095268724985706
cg00000769 0.0906490436125169
cg00000807 0.848774807614419
cg00000884 0.851563481100088
cg00000905 0.0721663682688335
cg00000924 0.581289105174297
cg00000948 0.873852937671315

Total number of rows: 483266

Table truncated, full table size 13737 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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