GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1079527 Query DataSets for GSM1079527
Status Public on May 24, 2013
Title PR01-091
Sample type genomic
Source name PR01-091_8942297088_R03C02
Organism Homo sapiens
Characteristics prepartum depression: yes
postpartum depression: yes
array batch: 5
experimental batch: 2
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-091_8942297088_R03C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.520574471518477
cg00000108 0.94628934449899
cg00000109 0.877656519241815
cg00000165 0.213068181818182
cg00000236 0.731491513181654
cg00000289 0.615049751243781
cg00000292 0.843575851393189
cg00000321 0.337211352018332
cg00000363 0.363669968948691
cg00000622 0.0444445142340115
cg00000658 0.78957514643731
cg00000714 0.202217484008529
cg00000721 0.924915201973481
cg00000734 0.0935072548732229
cg00000769 0.0983538737472867
cg00000807 0.81330685203575
cg00000884 0.862859712230216
cg00000905 0.0826804467411235
cg00000924 0.533791387786531
cg00000948 0.826455975710737

Total number of rows: 483266

Table truncated, full table size 13746 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap