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Sample GSM1079526 Query DataSets for GSM1079526
Status Public on May 24, 2013
Title PR01-068
Sample type genomic
Source name PR01-068_8942297088_R02C02
Organism Homo sapiens
Characteristics prepartum depression: yes
postpartum depression: yes
array batch: 5
experimental batch: 2
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-068_8942297088_R02C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.482728991235607
cg00000108 0.940731657469855
cg00000109 0.89847817380857
cg00000165 0.199961397413627
cg00000236 0.73563025210084
cg00000289 0.651572761838922
cg00000292 0.817662116040956
cg00000321 0.257170923379175
cg00000363 0.338047191546834
cg00000622 0.0400416663330473
cg00000658 0.781754619610454
cg00000714 0.19841725982581
cg00000721 0.917792609474198
cg00000734 0.0823946435604569
cg00000769 0.109161505764356
cg00000807 0.830418488444722
cg00000884 0.862192539501548
cg00000905 0.0865523321045039
cg00000924 0.520019295706705
cg00000948 0.84505502514394

Total number of rows: 483266

Table truncated, full table size 13750 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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