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Sample GSM1079525 Query DataSets for GSM1079525
Status Public on May 24, 2013
Title PR01-074
Sample type genomic
Source name PR01-074_8942297088_R06C01
Organism Homo sapiens
Characteristics prepartum depression: yes
postpartum depression: yes
array batch: 5
experimental batch: 2
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-074_8942297088_R06C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.556490550420748
cg00000108 0.926216197133376
cg00000109 0.881544502617801
cg00000165 0.245844107868489
cg00000236 0.744717109747785
cg00000289 0.662426310890475
cg00000292 0.852379191321499
cg00000321 0.333673790069139
cg00000363 0.378597592883307
cg00000622 0.0419715562386161
cg00000658 0.83906411582213
cg00000714 0.215158836043702
cg00000721 0.92251202836161
cg00000734 0.0980507587650445
cg00000769 0.0894138378025967
cg00000807 0.849150268336315
cg00000884 0.866798712552612
cg00000905 0.0947331826872936
cg00000924 0.606396240889912
cg00000948 0.887471783295711

Total number of rows: 483266

Table truncated, full table size 13729 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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