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Sample GSM1079524 Query DataSets for GSM1079524
Status Public on May 24, 2013
Title PR01-076
Sample type genomic
Source name PR01-076_8942297088_R05C01
Organism Homo sapiens
Characteristics prepartum depression: yes
postpartum depression: no
array batch: 5
experimental batch: 2
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-076_8942297088_R05C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.529881016765819
cg00000108 0.942562947470035
cg00000109 0.911672473867596
cg00000165 0.173840016796137
cg00000236 0.794343682754381
cg00000289 0.680889861415025
cg00000292 0.854219948849105
cg00000321 0.350966079862602
cg00000363 0.39891673192378
cg00000622 0.0468909641263177
cg00000658 0.853883398554089
cg00000714 0.242590094430526
cg00000721 0.917982679572084
cg00000734 0.100528374390997
cg00000769 0.0897747918565263
cg00000807 0.846915803692031
cg00000884 0.869305352636472
cg00000905 0.107515657620042
cg00000924 0.603088101725704
cg00000948 0.875870982243201

Total number of rows: 483266

Table truncated, full table size 13729 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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