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Sample GSM1079523 Query DataSets for GSM1079523
Status Public on May 24, 2013
Title PR01-083
Sample type genomic
Source name PR01-083_8942297088_R04C01
Organism Homo sapiens
Characteristics prepartum depression: yes
postpartum depression: no
array batch: 5
experimental batch: 2
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-083_8942297088_R04C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.543281002448509
cg00000108 0.960459076819972
cg00000109 0.874705287975749
cg00000165 0.222176165803109
cg00000236 0.734258271077908
cg00000289 0.621221864951768
cg00000292 0.849790502793296
cg00000321 0.338624338624339
cg00000363 0.447609715125639
cg00000622 0.0503630403882518
cg00000658 0.825088457173376
cg00000714 0.21618945457546
cg00000721 0.952579393591033
cg00000734 0.108378870673953
cg00000769 0.108550782394006
cg00000807 0.841063604774135
cg00000884 0.876232810112516
cg00000905 0.10195005131714
cg00000924 0.566046784248948
cg00000948 0.87101431837324

Total number of rows: 483266

Table truncated, full table size 13737 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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