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Sample GSM1079522 Query DataSets for GSM1079522
Status Public on May 24, 2013
Title PR01-062
Sample type genomic
Source name PR01-062_8942297088_R03C01
Organism Homo sapiens
Characteristics prepartum depression: yes
postpartum depression: yes
array batch: 5
experimental batch: 2
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-062_8942297088_R03C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.518693728063482
cg00000108 0.93614338467081
cg00000109 0.89675800849093
cg00000165 0.209349183961314
cg00000236 0.730215187622266
cg00000289 0.683524904214559
cg00000292 0.845314452311537
cg00000321 0.372591907125431
cg00000363 0.38863392993728
cg00000622 0.0343323952058349
cg00000658 0.806451612903226
cg00000714 0.199644960166263
cg00000721 0.949697885196375
cg00000734 0.0907105416423995
cg00000769 0.108038328032792
cg00000807 0.825729683581452
cg00000884 0.856810063674484
cg00000905 0.0864
cg00000924 0.526331555928345
cg00000948 0.850502344273275

Total number of rows: 483266

Table truncated, full table size 13744 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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