GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1079521 Query DataSets for GSM1079521
Status Public on May 24, 2013
Title PR01-073
Sample type genomic
Source name PR01-073_8942297088_R02C01
Organism Homo sapiens
Characteristics prepartum depression: yes
postpartum depression: no
array batch: 5
experimental batch: 2
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-073_8942297088_R02C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.50363005050505
cg00000108 0.923892304430782
cg00000109 0.886216653193209
cg00000165 0.163873775843308
cg00000236 0.762391956253307
cg00000289 0.734669338677355
cg00000292 0.822438771990342
cg00000321 0.298380952380952
cg00000363 0.38306916426513
cg00000622 0.03815067523535
cg00000658 0.793716198815349
cg00000714 0.187017075264714
cg00000721 0.922586967172954
cg00000734 0.0847870182555781
cg00000769 0.101315495209816
cg00000807 0.801930176824924
cg00000884 0.846153846153846
cg00000905 0.0737362807234503
cg00000924 0.538638913124766
cg00000948 0.844019679006372

Total number of rows: 483266

Table truncated, full table size 13747 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap