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Sample GSM1079520 Query DataSets for GSM1079520
Status Public on May 24, 2013
Title PR01-067
Sample type genomic
Source name PR01-067_8942297088_R01C01
Organism Homo sapiens
Characteristics prepartum depression: yes
postpartum depression: yes
array batch: 5
experimental batch: 2
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-067_8942297088_R01C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.474148296593186
cg00000108 0.931480362537764
cg00000109 0.849511400651466
cg00000165 0.18090889323766
cg00000236 0.6841046277666
cg00000289 0.637239784117194
cg00000292 0.802338634237605
cg00000321 0.315010351966874
cg00000363 0.412972787951395
cg00000622 0.0398257849629457
cg00000658 0.772031561935545
cg00000714 0.204148798244739
cg00000721 0.900803831024457
cg00000734 0.0847270566261992
cg00000769 0.104411798670206
cg00000807 0.856992731412558
cg00000884 0.831856583556563
cg00000905 0.076183292475957
cg00000924 0.486942862752798
cg00000948 0.83173677634319

Total number of rows: 483266

Table truncated, full table size 13751 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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