|
| Status |
Public on May 24, 2013 |
| Title |
PR01-028 |
| Sample type |
genomic |
| |
|
| Source name |
PR01-028_8942297033_R06C02
|
| Organism |
Homo sapiens |
| Characteristics |
prepartum depression: yes
postpartum depression: yes
array batch: 4
experimental batch: 2
cross batch control: no
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
|
| Label |
Cy3, Cy5
|
| Label protocol |
Standard Illumina protocol
|
| |
|
| Hybridization protocol |
Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
|
| Scan protocol |
Polymer-coated chips were image-processed in Illumina's iScan scanner
|
| Description |
PR01-028_8942297033_R06C02
|
| Data processing |
Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
|
| |
|
| Submission date |
Feb 06, 2013 |
| Last update date |
May 24, 2013 |
| Contact name |
Jerry Guintivano |
| E-mail(s) |
jchoa002@umaryland.edu
|
| Organization name |
Johns Hopkins University
|
| Street address |
720 Rutland Avenue, Ross 1068
|
| City |
Baltimore |
| State/province |
MD |
| ZIP/Postal code |
21205 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE44132 |
Antenatal Blood DNA Methylation Profiles |
|
