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Sample GSM1079519 Query DataSets for GSM1079519
Status Public on May 24, 2013
Title PR01-028
Sample type genomic
Source name PR01-028_8942297033_R06C02
Organism Homo sapiens
Characteristics prepartum depression: yes
postpartum depression: yes
array batch: 4
experimental batch: 2
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-028_8942297033_R06C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.594877235525917
cg00000108 0.928498985801217
cg00000109 0.914663461538462
cg00000165 0.246019711902957
cg00000236 0.776431908634712
cg00000289 0.669416243654822
cg00000292 0.828938952455405
cg00000321 0.3011393514461
cg00000363 0.402766693269487
cg00000622 0.0425736829927451
cg00000658 0.827029556266084
cg00000714 0.203841488071169
cg00000721 0.934070378859377
cg00000734 0.0949527233985884
cg00000769 0.0923782829616634
cg00000807 0.841945572515521
cg00000884 0.864012337025095
cg00000905 0.0981387478849408
cg00000924 0.541066804764371
cg00000948 0.885331918405848

Total number of rows: 483266

Table truncated, full table size 13745 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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