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Sample GSM1079518 Query DataSets for GSM1079518
Status Public on May 24, 2013
Title PR01-057
Sample type genomic
Source name PR01-057_8942297033_R05C02
Organism Homo sapiens
Characteristics prepartum depression: yes
postpartum depression: yes
array batch: 4
experimental batch: 2
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-057_8942297033_R05C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.605447860962567
cg00000108 0.935817104149026
cg00000109 0.864608851869998
cg00000165 0.240796727725413
cg00000236 0.781543675858882
cg00000289 0.723775073988819
cg00000292 0.837680940892642
cg00000321 0.305607160952542
cg00000363 0.411391149037507
cg00000622 0.0397438077319565
cg00000658 0.819468145620023
cg00000714 0.206351188246556
cg00000721 0.906118814400204
cg00000734 0.0808250127541724
cg00000769 0.0894966234658179
cg00000807 0.811277152981051
cg00000884 0.839410077836952
cg00000905 0.10384230824168
cg00000924 0.578776595744681
cg00000948 0.879285144831252

Total number of rows: 483266

Table truncated, full table size 13739 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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