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Sample GSM1079516 Query DataSets for GSM1079516
Status Public on May 24, 2013
Title PR01-024
Sample type genomic
Source name PR01-024_8942297033_R03C02
Organism Homo sapiens
Characteristics prepartum depression: yes
postpartum depression: no
array batch: 4
experimental batch: 2
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-024_8942297033_R03C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.502464788732394
cg00000108 0.939911198815984
cg00000109 0.858608893956671
cg00000165 0.169262295081967
cg00000236 0.721140045109699
cg00000289 0.642245072836332
cg00000292 0.813313313313313
cg00000321 0.285147235299548
cg00000363 0.376994318624017
cg00000622 0.0380663913848127
cg00000658 0.796799860103174
cg00000714 0.16567439071401
cg00000721 0.923814328960646
cg00000734 0.0830882907336198
cg00000769 0.108009226967827
cg00000807 0.799964129849943
cg00000884 0.852399793566145
cg00000905 0.0756302521008403
cg00000924 0.521007400334209
cg00000948 0.877014481990345

Total number of rows: 483266

Table truncated, full table size 13751 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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