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Sample GSM1079515 Query DataSets for GSM1079515
Status Public on May 24, 2013
Title PR01-039
Sample type genomic
Source name PR01-039_8942297033_R02C02
Organism Homo sapiens
Characteristics prepartum depression: yes
postpartum depression: yes
array batch: 4
experimental batch: 2
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-039_8942297033_R02C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.497437918801734
cg00000108 0.91186327077748
cg00000109 0.846642096642097
cg00000165 0.206919642857143
cg00000236 0.694039490680937
cg00000289 0.649116347569956
cg00000292 0.813749742321171
cg00000321 0.265502892520045
cg00000363 0.361267040898156
cg00000622 0.0402583705719752
cg00000658 0.773328690807799
cg00000714 0.182428788547335
cg00000721 0.907654057893802
cg00000734 0.0901908635794743
cg00000769 0.101570163117242
cg00000807 0.80105733526339
cg00000884 0.840353614144566
cg00000905 0.0718047752808989
cg00000924 0.512101421436804
cg00000948 0.847422992507379

Total number of rows: 483266

Table truncated, full table size 13748 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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