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Sample GSM1079513 Query DataSets for GSM1079513
Status Public on May 24, 2013
Title PR01-026
Sample type genomic
Source name PR01-026_8942297033_R06C01
Organism Homo sapiens
Characteristics prepartum depression: yes
postpartum depression: no
array batch: 4
experimental batch: 2
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-026_8942297033_R06C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.544122281752285
cg00000108 0.94470335185517
cg00000109 0.896514552641035
cg00000165 0.270381231671554
cg00000236 0.735115431348724
cg00000289 0.668154287535862
cg00000292 0.863040345821326
cg00000321 0.36923958418597
cg00000363 0.406617647058824
cg00000622 0.0383921562856273
cg00000658 0.831700413672981
cg00000714 0.163197235171194
cg00000721 0.919309215423552
cg00000734 0.08635000348748
cg00000769 0.099199837495923
cg00000807 0.852026515994127
cg00000884 0.884604479727814
cg00000905 0.111461619348055
cg00000924 0.602599469496021
cg00000948 0.890296100850191

Total number of rows: 483266

Table truncated, full table size 13741 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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