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Sample GSM1079511 Query DataSets for GSM1079511
Status Public on May 24, 2013
Title PR01-053
Sample type genomic
Source name PR01-053_8942297033_R04C01
Organism Homo sapiens
Characteristics prepartum depression: yes
postpartum depression: yes
array batch: 4
experimental batch: 2
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-053_8942297033_R04C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.544199360161643
cg00000108 0.95197387378734
cg00000109 0.898365002209456
cg00000165 0.239139515455305
cg00000236 0.717657822506862
cg00000289 0.548434622467772
cg00000292 0.825188536953243
cg00000321 0.311872586872587
cg00000363 0.372624145443618
cg00000622 0.0418874037957417
cg00000658 0.829337196667874
cg00000714 0.203880634706848
cg00000721 0.923853799294646
cg00000734 0.0940560236848098
cg00000769 0.0988275972965339
cg00000807 0.828595648488273
cg00000884 0.859790095113152
cg00000905 0.10484613967201
cg00000924 0.547452265280759
cg00000948 0.852439781903513

Total number of rows: 483266

Table truncated, full table size 13745 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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