GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1079509 Query DataSets for GSM1079509
Status Public on May 24, 2013
Title PR01-072
Sample type genomic
Source name PR01-072_8942297033_R02C01
Organism Homo sapiens
Characteristics prepartum depression: yes
postpartum depression: no
array batch: 4
experimental batch: 2
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-072_8942297033_R02C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.558034942051548
cg00000108 0.922753988245172
cg00000109 0.849225897255454
cg00000165 0.217770034843206
cg00000236 0.753030895580759
cg00000289 0.657783417935702
cg00000292 0.817286126241589
cg00000321 0.260580658352075
cg00000363 0.383683293219354
cg00000622 0.046678711365781
cg00000658 0.810451265107382
cg00000714 0.199043106651802
cg00000721 0.910619174434088
cg00000734 0.0763346485224253
cg00000769 0.0951211785823308
cg00000807 0.823965869040994
cg00000884 0.829373650107991
cg00000905 0.0728795438346401
cg00000924 0.534314662588415
cg00000948 0.835900347789055

Total number of rows: 483266

Table truncated, full table size 13747 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap