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Sample GSM1079508 Query DataSets for GSM1079508
Status Public on May 24, 2013
Title PR01-035
Sample type genomic
Source name PR01-035_8942297033_R01C01
Organism Homo sapiens
Characteristics prepartum depression: yes
postpartum depression: yes
array batch: 4
experimental batch: 2
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-035_8942297033_R01C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.397510195320884
cg00000108 0.922907773897297
cg00000109 0.850025419420437
cg00000165 0.173668783585735
cg00000236 0.734756768655074
cg00000289 0.629754453538758
cg00000292 0.801654580737412
cg00000321 0.27368884971353
cg00000363 0.413945668524909
cg00000622 0.0413093447579019
cg00000658 0.782166301969365
cg00000714 0.176243153259585
cg00000721 0.901766647252961
cg00000734 0.0762855209742896
cg00000769 0.106336319412961
cg00000807 0.782237983852713
cg00000884 0.841478190630048
cg00000905 0.073394495412844
cg00000924 0.483637178720861
cg00000948 0.802973646723647

Total number of rows: 483266

Table truncated, full table size 13752 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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