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Sample GSM1079507 Query DataSets for GSM1079507
Status Public on May 24, 2013
Title PR01-065
Sample type genomic
Source name PR01-065_6285617092_R06C01
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 3
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-065_6285617092_R06C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.662186611527526
cg00000108 0.959663865546219
cg00000109 0.907610684229784
cg00000165 0.188315371525808
cg00000236 0.824846820198606
cg00000289 0.702455739577384
cg00000292 0.902049959272332
cg00000321 0.248319088319088
cg00000363 0.395706334481845
cg00000622 0.0386794875532918
cg00000658 0.897101744383357
cg00000714 0.222726904047368
cg00000721 0.93896591939873
cg00000734 0.0859779792746114
cg00000769 0.0676449326456601
cg00000807 0.873900779824125
cg00000884 0.886319534282018
cg00000905 0.09679234665166
cg00000924 0.631290869459918
cg00000948 0.917362735271188

Total number of rows: 483266

Table truncated, full table size 13745 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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