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Sample GSM1079506 Query DataSets for GSM1079506
Status Public on May 24, 2013
Title PR01-034
Sample type genomic
Source name PR01-034_6285617092_R05C02
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: yes
array batch: 3
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-034_6285617092_R05C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.599214145383104
cg00000108 0.958974742191003
cg00000109 0.927309782608696
cg00000165 0.230696082160517
cg00000236 0.782564401106098
cg00000289 0.684872660325253
cg00000292 0.865256190532474
cg00000321 0.337589285714286
cg00000363 0.419256961769267
cg00000622 0.035583683558317
cg00000658 0.87687875751503
cg00000714 0.230936283548453
cg00000721 0.945264452644526
cg00000734 0.0951274468384734
cg00000769 0.0838201612121064
cg00000807 0.881923207611281
cg00000884 0.893156790770844
cg00000905 0.118702667105696
cg00000924 0.58536118030274
cg00000948 0.889164505581238

Total number of rows: 483266

Table truncated, full table size 13725 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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