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Sample GSM1079505 Query DataSets for GSM1079505
Status Public on May 24, 2013
Title PR01-055
Sample type genomic
Source name PR01-055_6285617092_R05C01
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 3
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-055_6285617092_R05C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.591860465116279
cg00000108 0.965858448523302
cg00000109 0.895394840955847
cg00000165 0.190812720848057
cg00000236 0.788966588966589
cg00000289 0.748059280169372
cg00000292 0.884495748945877
cg00000321 0.373263433813893
cg00000363 0.450858534085085
cg00000622 0.0425845108550166
cg00000658 0.874372214755606
cg00000714 0.232035863614811
cg00000721 0.940517574353032
cg00000734 0.0973169622555707
cg00000769 0.088738464296573
cg00000807 0.863615829418142
cg00000884 0.875460992907801
cg00000905 0.097749527572582
cg00000924 0.614640302902819
cg00000948 0.882017591486589

Total number of rows: 483266

Table truncated, full table size 13726 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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