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Sample GSM1079503 Query DataSets for GSM1079503
Status Public on May 24, 2013
Title PR01-063
Sample type genomic
Source name PR01-063_6285617092_R04C01
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 3
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-063_6285617092_R04C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.601879404855129
cg00000108 0.961575796796635
cg00000109 0.907213268659052
cg00000165 0.242753623188406
cg00000236 0.767692548039369
cg00000289 0.709392655367232
cg00000292 0.872972638355825
cg00000321 0.397327774092675
cg00000363 0.444444444444444
cg00000622 0.0431661098737187
cg00000658 0.872793872793873
cg00000714 0.29105577852404
cg00000721 0.944509880905641
cg00000734 0.094407743124904
cg00000769 0.0893024110952089
cg00000807 0.862926333302523
cg00000884 0.894202032277346
cg00000905 0.11858504398827
cg00000924 0.586577678902484
cg00000948 0.882342657342657

Total number of rows: 483266

Table truncated, full table size 13728 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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