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Sample GSM1079502 Query DataSets for GSM1079502
Status Public on May 24, 2013
Title PR01-031
Sample type genomic
Source name PR01-031_6285617092_R03C02
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: yes
array batch: 3
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-031_6285617092_R03C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.577100646352724
cg00000108 0.936375012031957
cg00000109 0.89694248449861
cg00000165 0.240425531914894
cg00000236 0.775617216517369
cg00000289 0.729254571026723
cg00000292 0.87336062729859
cg00000321 0.408965713742996
cg00000363 0.44170653907496
cg00000622 0.0398966236614147
cg00000658 0.863989134652697
cg00000714 0.24760770825065
cg00000721 0.936444367055546
cg00000734 0.107947624847747
cg00000769 0.086561628486631
cg00000807 0.861142547852187
cg00000884 0.891308857083593
cg00000905 0.106030483764082
cg00000924 0.567415126772669
cg00000948 0.888358028424554

Total number of rows: 483266

Table truncated, full table size 13726 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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