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Sample GSM1079501 Query DataSets for GSM1079501
Status Public on May 24, 2013
Title PR01-056
Sample type genomic
Source name PR01-056_6285617092_R03C01
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 3
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-056_6285617092_R03C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.619291944586968
cg00000108 0.954744150167138
cg00000109 0.91757085020243
cg00000165 0.225666460012399
cg00000236 0.82975893599335
cg00000289 0.677643784786642
cg00000292 0.872440338722094
cg00000321 0.369171369171369
cg00000363 0.430094300943009
cg00000622 0.0404381530122396
cg00000658 0.873967962740809
cg00000714 0.276565922032413
cg00000721 0.940863079381993
cg00000734 0.0858758862423325
cg00000769 0.0965870826087419
cg00000807 0.8661094074587
cg00000884 0.867060785205396
cg00000905 0.121036349574633
cg00000924 0.590436829114287
cg00000948 0.902213780455855

Total number of rows: 483266

Table truncated, full table size 13727 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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