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Sample GSM1079500 Query DataSets for GSM1079500
Status Public on May 24, 2013
Title PR01-047
Sample type genomic
Source name PR01-047_6285617092_R02C02
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: yes
array batch: 3
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-047_6285617092_R02C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.565141460006986
cg00000108 0.95979327259986
cg00000109 0.888428381962865
cg00000165 0.328234265734266
cg00000236 0.786267116491367
cg00000289 0.698529411764706
cg00000292 0.857499396183882
cg00000321 0.424960815047022
cg00000363 0.459185918591859
cg00000622 0.0380825289436262
cg00000658 0.878851053972666
cg00000714 0.254524732163209
cg00000721 0.940429534409782
cg00000734 0.101727129989257
cg00000769 0.099182194488414
cg00000807 0.8828276476445
cg00000884 0.902196908055329
cg00000905 0.11095041322314
cg00000924 0.629367251650298
cg00000948 0.885922017758332

Total number of rows: 483266

Table truncated, full table size 13726 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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