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Sample GSM1079499 Query DataSets for GSM1079499
Status Public on May 24, 2013
Title PR01-059
Sample type genomic
Source name PR01-059_6285617092_R02C01
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 3
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-059_6285617092_R02C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.541307931855651
cg00000108 0.9654296875
cg00000109 0.896168915977362
cg00000165 0.216768373573892
cg00000236 0.737532286906418
cg00000289 0.703569580962235
cg00000292 0.86833268254588
cg00000321 0.339964827434601
cg00000363 0.421510724277277
cg00000622 0.0371054977464404
cg00000658 0.846014492753623
cg00000714 0.213632182795178
cg00000721 0.90649438966338
cg00000734 0.100472193074502
cg00000769 0.0791574461041125
cg00000807 0.863154478580701
cg00000884 0.886475988700565
cg00000905 0.097926775474195
cg00000924 0.599853916854343
cg00000948 0.891207349081365

Total number of rows: 483266

Table truncated, full table size 13734 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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