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Sample GSM1079498 Query DataSets for GSM1079498
Status Public on May 24, 2013
Title PR01-084 2
Sample type genomic
Source name PR01-084_6285617092_R01C02
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 3
experimental batch: 1
cross batch control: yes
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-084_6285617092_R01C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.580582524271845
cg00000108 0.95367209597191
cg00000109 0.93515037593985
cg00000165 0.24750192159877
cg00000236 0.787615631489522
cg00000289 0.718590831918506
cg00000292 0.872073511785857
cg00000321 0.343055713797425
cg00000363 0.435963155786944
cg00000622 0.0372531001153236
cg00000658 0.848445804477372
cg00000714 0.191058348067694
cg00000721 0.952265763586518
cg00000734 0.0968115425721411
cg00000769 0.089531018417555
cg00000807 0.864842034127386
cg00000884 0.880240549828179
cg00000905 0.120549120549121
cg00000924 0.593377813805575
cg00000948 0.878285483218763

Total number of rows: 483266

Table truncated, full table size 13733 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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