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Sample GSM1079495 Query DataSets for GSM1079495
Status Public on May 24, 2013
Title PR01-060
Sample type genomic
Source name PR01-060_6285617078_R05C02
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 2
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-060_6285617078_R05C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.60392029807225
cg00000108 0.964758876523582
cg00000109 0.892042071839651
cg00000165 0.288505508210351
cg00000236 0.787110508999419
cg00000289 0.628003696857671
cg00000292 0.871966885526691
cg00000321 0.384812588401697
cg00000363 0.393156921325935
cg00000622 0.0435650421781762
cg00000658 0.863944682252223
cg00000714 0.250019702104185
cg00000721 0.944298313476714
cg00000734 0.109839193240665
cg00000769 0.0766608933049749
cg00000807 0.886808121911722
cg00000884 0.880716341541414
cg00000905 0.132734113712375
cg00000924 0.59942962103635
cg00000948 0.897783251231527

Total number of rows: 483266

Table truncated, full table size 13728 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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