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Sample GSM1079494 Query DataSets for GSM1079494
Status Public on May 24, 2013
Title PR01-029
Sample type genomic
Source name PR01-029_6285617078_R05C01
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 2
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-029_6285617078_R05C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.679172767203514
cg00000108 0.963788300835655
cg00000109 0.852720918622067
cg00000165 0.270214642752132
cg00000236 0.810372771474878
cg00000289 0.657258064516129
cg00000292 0.875386001029336
cg00000321 0.383293899804547
cg00000363 0.46807440925088
cg00000622 0.034779179091046
cg00000658 0.87852887852888
cg00000714 0.288499681898133
cg00000721 0.930422030307968
cg00000734 0.128158714068496
cg00000769 0.0817160177000704
cg00000807 0.876980002494491
cg00000884 0.896027685826061
cg00000905 0.116869918699187
cg00000924 0.555728684812777
cg00000948 0.897080445284604

Total number of rows: 483266

Table truncated, full table size 13717 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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