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Sample GSM1079493 Query DataSets for GSM1079493
Status Public on May 24, 2013
Title PR01-084
Sample type genomic
Source name PR01-084_6285617078_R04C02
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 1
experimental batch: 1
cross batch control: yes
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-084_6285617078_R04C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.589536516853933
cg00000108 0.964497041420118
cg00000109 0.937699923838538
cg00000165 0.249889135254989
cg00000236 0.810350030175015
cg00000289 0.761436672967864
cg00000292 0.86049364896074
cg00000321 0.318407960199005
cg00000363 0.435592521308771
cg00000622 0.0525615145445257
cg00000658 0.840156078860898
cg00000714 0.201975640164956
cg00000721 0.934855859228753
cg00000734 0.118214816036958
cg00000769 0.0930213886079036
cg00000807 0.871638494045332
cg00000884 0.884093335366784
cg00000905 0.103894005493618
cg00000924 0.583987525540381
cg00000948 0.87303343166175

Total number of rows: 483266

Table truncated, full table size 13733 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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