GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1079492 Query DataSets for GSM1079492
Status Public on May 24, 2013
Title PR01-066
Sample type genomic
Source name PR01-066_6285617078_R04C01
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 2
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-066_6285617078_R04C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.631868131868132
cg00000108 0.953615542974781
cg00000109 0.912554958475818
cg00000165 0.280478087649402
cg00000236 0.798662119622246
cg00000289 0.760229132569558
cg00000292 0.873789328039463
cg00000321 0.393258426966292
cg00000363 0.452176560121766
cg00000622 0.0397937793918755
cg00000658 0.86797616151788
cg00000714 0.292272820935504
cg00000721 0.948146583588552
cg00000734 0.113803105272138
cg00000769 0.0830445389906612
cg00000807 0.887190029551587
cg00000884 0.892140988915182
cg00000905 0.117393120735274
cg00000924 0.63042631886315
cg00000948 0.905717205399882

Total number of rows: 483266

Table truncated, full table size 13726 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap