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Sample GSM1079491 Query DataSets for GSM1079491
Status Public on May 24, 2013
Title PR01-045
Sample type genomic
Source name PR01-045_6285617078_R03C02
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 2
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-045_6285617078_R03C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.619282839370655
cg00000108 0.948651452282158
cg00000109 0.896811922278815
cg00000165 0.234733257661748
cg00000236 0.795528191834089
cg00000289 0.636363636363636
cg00000292 0.862436408634676
cg00000321 0.342496210207175
cg00000363 0.431750639297809
cg00000622 0.0428534609143107
cg00000658 0.864866636083623
cg00000714 0.230038279666742
cg00000721 0.926651415498999
cg00000734 0.111401145166723
cg00000769 0.0773986981107503
cg00000807 0.857588947766843
cg00000884 0.87657980964269
cg00000905 0.090181205225453
cg00000924 0.614464520036338
cg00000948 0.898860151594052

Total number of rows: 483266

Table truncated, full table size 13728 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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