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Sample GSM1079490 Query DataSets for GSM1079490
Status Public on May 24, 2013
Title PR01-013
Sample type genomic
Source name PR01-013_6285617078_R03C01
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: yes
array batch: 2
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-013_6285617078_R03C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.623552502453386
cg00000108 0.916234114909612
cg00000109 0.920840407470289
cg00000165 0.290649350649351
cg00000236 0.793220980874834
cg00000289 0.712700369913687
cg00000292 0.873584905660377
cg00000321 0.461461760893409
cg00000363 0.438932471927396
cg00000622 0.0425154531896121
cg00000658 0.858390119250426
cg00000714 0.233308877476156
cg00000721 0.918994805559455
cg00000734 0.108872000683118
cg00000769 0.0946883420792188
cg00000807 0.86828174924889
cg00000884 0.892804154302671
cg00000905 0.0795577715152829
cg00000924 0.605113182423435
cg00000948 0.897380675203725

Total number of rows: 483266

Table truncated, full table size 13721 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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