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Sample GSM1079489 Query DataSets for GSM1079489
Status Public on May 24, 2013
Title PR01-044
Sample type genomic
Source name PR01-044_6285617078_R02C02
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: yes
array batch: 2
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-044_6285617078_R02C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.610153958944281
cg00000108 0.964831538728725
cg00000109 0.897066481513626
cg00000165 0.218491606113756
cg00000236 0.790918000653381
cg00000289 0.720746887966805
cg00000292 0.869582169081812
cg00000321 0.30966110268083
cg00000363 0.412924262635245
cg00000622 0.0395162115266746
cg00000658 0.864987262949335
cg00000714 0.217809755185947
cg00000721 0.928600405679513
cg00000734 0.102939923306349
cg00000769 0.0894547490769369
cg00000807 0.882782246053024
cg00000884 0.87040106065628
cg00000905 0.124531132783196
cg00000924 0.612695343966489
cg00000948 0.902401666462443

Total number of rows: 483266

Table truncated, full table size 13728 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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