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Sample GSM1079488 Query DataSets for GSM1079488
Status Public on May 24, 2013
Title PR01-038
Sample type genomic
Source name PR01-038_6285617078_R02C01
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 2
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-038_6285617078_R02C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.596111580726965
cg00000108 0.955133735979293
cg00000109 0.930144641683103
cg00000165 0.230769230769231
cg00000236 0.816252178045303
cg00000289 0.754517558813502
cg00000292 0.865002876869965
cg00000321 0.392746013224426
cg00000363 0.437109658678286
cg00000622 0.0407116516681145
cg00000658 0.855318195398865
cg00000714 0.256625581290352
cg00000721 0.942145439935717
cg00000734 0.104476283705615
cg00000769 0.0759910944877142
cg00000807 0.86714876033058
cg00000884 0.874385749385749
cg00000905 0.11106976744186
cg00000924 0.603953723464001
cg00000948 0.901235366405795

Total number of rows: 483266

Table truncated, full table size 13729 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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