GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1079485 Query DataSets for GSM1079485
Status Public on May 24, 2013
Title PR01-084 1
Sample type genomic
Source name PR01-084_6285617054_R06C02
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 2
experimental batch: 1
cross batch control: yes
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-084_6285617054_R06C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.558147882268485
cg00000108 0.952896880282772
cg00000109 0.899701237729407
cg00000165 0.247237856993955
cg00000236 0.823957764427453
cg00000289 0.707224334600761
cg00000292 0.872869366031126
cg00000321 0.316749275226784
cg00000363 0.383434820429974
cg00000622 0.0489119710268042
cg00000658 0.855545257954897
cg00000714 0.167136672359693
cg00000721 0.94383669786850
cg00000734 0.095863516349604
cg00000769 0.0725569614170834
cg00000807 0.87322009065519
cg00000884 0.901145750066613
cg00000905 0.0973291081937528
cg00000924 0.583904374259364
cg00000948 0.90217455708953

Total number of rows: 483266

Table truncated, full table size 13743 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap