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Sample GSM1079484 Query DataSets for GSM1079484
Status Public on May 24, 2013
Title PR01-022
Sample type genomic
Source name PR01-022_6285617054_R06C01
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 1
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-022_6285617054_R06C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.614866886030512
cg00000108 0.95093608779858
cg00000109 0.929055730114106
cg00000165 0.212522686025408
cg00000236 0.804314964958087
cg00000289 0.792590027700831
cg00000292 0.874463708492507
cg00000321 0.387908314032426
cg00000363 0.425353209478251
cg00000622 0.0408790348518445
cg00000658 0.856450180973844
cg00000714 0.229953710616694
cg00000721 0.918364886048475
cg00000734 0.106834349593496
cg00000769 0.0680665155462123
cg00000807 0.864963503649635
cg00000884 0.880311190903651
cg00000905 0.102854683689571
cg00000924 0.580740059756378
cg00000948 0.905963699222126

Total number of rows: 483266

Table truncated, full table size 13738 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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