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Sample GSM1079483 Query DataSets for GSM1079483
Status Public on May 24, 2013
Title PR01-054
Sample type genomic
Source name PR01-054_6285617054_R05C02
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 1
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-054_6285617054_R05C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.5826224328594
cg00000108 0.951368222399652
cg00000109 0.890818169190165
cg00000165 0.259081453032485
cg00000236 0.791704827947141
cg00000289 0.726860254083485
cg00000292 0.842606149341142
cg00000321 0.256913716814159
cg00000363 0.433708787985451
cg00000622 0.0393461019604542
cg00000658 0.86417221937468
cg00000714 0.208313799031099
cg00000721 0.951130395067367
cg00000734 0.122085804938612
cg00000769 0.0748996801209626
cg00000807 0.870562941512
cg00000884 0.870919273323317
cg00000905 0.139217743144013
cg00000924 0.605567690663196
cg00000948 0.88748140930304

Total number of rows: 483266

Table truncated, full table size 13732 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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