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Sample GSM1079482 Query DataSets for GSM1079482
Status Public on May 24, 2013
Title PR01-017
Sample type genomic
 
Source name PR01-017_6285617054_R05C01
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 1
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
 
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-017_6285617054_R05C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
 
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
E-mail(s) jchoa002@umaryland.edu
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
ID_REF
VALUE Normalized Beta Values

Data table
ID_REF VALUE
cg00000029 0.654745989304813
cg00000108 0.945948203842941
cg00000109 0.861624834874505
cg00000165 0.238566402814424
cg00000236 0.788938530272685
cg00000289 0.710740597130671
cg00000292 0.875216262975779
cg00000321 0.326923076923077
cg00000363 0.376598110061145
cg00000622 0.0344271564899269
cg00000658 0.87357943994652
cg00000714 0.230107357120303
cg00000721 0.932060390763766
cg00000734 0.109492210040392
cg00000769 0.0896527352699266
cg00000807 0.855123835491934
cg00000884 0.874410377358491
cg00000905 0.0866479617098531
cg00000924 0.57628311466345
cg00000948 0.881201443689974

Total number of rows: 483266

Table truncated, full table size 13732 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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