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Sample GSM1079481 Query DataSets for GSM1079481
Status Public on May 24, 2013
Title PR01-025
Sample type genomic
Source name PR01-025_6285617054_R04C02
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 1
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-025_6285617054_R04C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.561919268849962
cg00000108 0.942632547248704
cg00000109 0.925101497970041
cg00000165 0.261390030373414
cg00000236 0.764728582454335
cg00000289 0.742675159235669
cg00000292 0.84571276170156
cg00000321 0.408835341365462
cg00000363 0.4341911056921
cg00000622 0.0410537738691348
cg00000658 0.874355459826382
cg00000714 0.24160853508412
cg00000721 0.93705595026643
cg00000734 0.105435389895443
cg00000769 0.0889299823546669
cg00000807 0.867802032367332
cg00000884 0.873184898354308
cg00000905 0.098634514816967
cg00000924 0.625230154137514
cg00000948 0.900684716376657

Total number of rows: 483266

Table truncated, full table size 13732 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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