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Sample GSM1079480 Query DataSets for GSM1079480
Status Public on May 24, 2013
Title PR01-016
Sample type genomic
Source name PR01-016_6285617054_R04C01
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 1
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-016_6285617054_R04C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.603843441466855
cg00000108 0.948915662650602
cg00000109 0.916025312125877
cg00000165 0.235246400324478
cg00000236 0.812875888463641
cg00000289 0.663557858376511
cg00000292 0.868073509887499
cg00000321 0.321894983337837
cg00000363 0.40433699239006
cg00000622 0.0419910480683143
cg00000658 0.856465761177136
cg00000714 0.23708018341802
cg00000721 0.93785016286645
cg00000734 0.103724588217836
cg00000769 0.071362097279167
cg00000807 0.853896897141461
cg00000884 0.844550327575938
cg00000905 0.115035644847699
cg00000924 0.558299639383674
cg00000948 0.88282513628467

Total number of rows: 483266

Table truncated, full table size 13733 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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