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Sample GSM1079479 Query DataSets for GSM1079479
Status Public on May 24, 2013
Title PR01-020
Sample type genomic
Source name PR01-020_6285617054_R03C02
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: yes
array batch: 1
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-020_6285617054_R03C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.55949289751031
cg00000108 0.946056175452097
cg00000109 0.93829457364341
cg00000165 0.252912438932732
cg00000236 0.787390443878993
cg00000289 0.7339593114241
cg00000292 0.865298310454065
cg00000321 0.353292361720808
cg00000363 0.444799895540902
cg00000622 0.0471000850278048
cg00000658 0.854271713656701
cg00000714 0.28075259000516
cg00000721 0.930621379673512
cg00000734 0.108922799368563
cg00000769 0.0713422321304557
cg00000807 0.857771726798276
cg00000884 0.874128984432913
cg00000905 0.080588530346096
cg00000924 0.579066652930875
cg00000948 0.879486277269529

Total number of rows: 483266

Table truncated, full table size 13730 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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