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Sample GSM1079478 Query DataSets for GSM1079478
Status Public on May 24, 2013
Title PR01-019
Sample type genomic
Source name PR01-019_6285617054_R03C01
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 1
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-019_6285617054_R03C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.561160567095285
cg00000108 0.953950597088173
cg00000109 0.90819034141164
cg00000165 0.223623853211009
cg00000236 0.770549591411633
cg00000289 0.651207359141433
cg00000292 0.856471098893149
cg00000321 0.346544181977253
cg00000363 0.428867976750623
cg00000622 0.0401180396390018
cg00000658 0.862674984783932
cg00000714 0.210621062106211
cg00000721 0.919788918205805
cg00000734 0.103521626093122
cg00000769 0.0754797443971138
cg00000807 0.868905796376014
cg00000884 0.85195530726257
cg00000905 0.0826325411334552
cg00000924 0.591010638297872
cg00000948 0.906073226829117

Total number of rows: 483266

Table truncated, full table size 13735 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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