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Sample GSM1079477 Query DataSets for GSM1079477
Status Public on May 24, 2013
Title PR01-011
Sample type genomic
Source name PR01-011_6285617054_R02C02
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: yes
array batch: 1
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-011_6285617054_R02C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.601492019430951
cg00000108 0.969200339078836
cg00000109 0.908791811369037
cg00000165 0.25092091007584
cg00000236 0.812350325008553
cg00000289 0.731338028169014
cg00000292 0.868530093405436
cg00000321 0.34096786110085
cg00000363 0.433132614479765
cg00000622 0.0362629889994973
cg00000658 0.854630454140695
cg00000714 0.250460478898054
cg00000721 0.940615209342068
cg00000734 0.106422159134505
cg00000769 0.0883460902731468
cg00000807 0.845827439886846
cg00000884 0.877287405812702
cg00000905 0.10796812749004
cg00000924 0.583043455687659
cg00000948 0.900454807507527

Total number of rows: 483266

Table truncated, full table size 13727 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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