GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1079476 Query DataSets for GSM1079476
Status Public on May 24, 2013
Title PR01-021
Sample type genomic
Source name PR01-021_6285617054_R02C01
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: yes
array batch: 1
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-021_6285617054_R02C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.588613242905586
cg00000108 0.948120649651972
cg00000109 0.885777598710717
cg00000165 0.222909450766947
cg00000236 0.517255462528078
cg00000289 0.665313653136531
cg00000292 0.846757872581559
cg00000321 0.37234268707483
cg00000363 0.41740555845317
cg00000622 0.0444423964729406
cg00000658 0.847507578309195
cg00000714 0.213117027176927
cg00000721 0.908826382153249
cg00000734 0.105760464152507
cg00000769 0.081560513569909
cg00000807 0.857603297051675
cg00000884 0.88446904185403
cg00000905 0.120545277507303
cg00000924 0.584883377620313
cg00000948 0.852645245050308

Total number of rows: 483266

Table truncated, full table size 13733 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap