GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1079475 Query DataSets for GSM1079475
Status Public on May 24, 2013
Title PR01-069
Sample type genomic
Source name PR01-069_6285617054_R01C02
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: yes
array batch: 1
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-069_6285617054_R01C02
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.572672730791562
cg00000108 0.945597247607784
cg00000109 0.902070604209097
cg00000165 0.253187613843352
cg00000236 0.78203412512546
cg00000289 0.7275390625
cg00000292 0.844560782200323
cg00000321 0.368636077938404
cg00000363 0.42634739417303
cg00000622 0.0430567519398804
cg00000658 0.852913890528802
cg00000714 0.244394730300771
cg00000721 0.946453515443117
cg00000734 0.109984181632083
cg00000769 0.0860949609039229
cg00000807 0.83894343151005
cg00000884 0.880141388174807
cg00000905 0.101048290084207
cg00000924 0.572349259465824
cg00000948 0.896984729865902

Total number of rows: 483266

Table truncated, full table size 13731 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap