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Sample GSM1079474 Query DataSets for GSM1079474
Status Public on May 24, 2013
Title PR01-009
Sample type genomic
Source name PR01-009_6285617054_R01C01
Organism Homo sapiens
Characteristics prepartum depression: no
postpartum depression: no
array batch: 1
experimental batch: 1
cross batch control: no
Extracted molecule genomic DNA
Extraction protocol All genomic DNA from nuclei was isolated with the MasterPure DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions.
Label Cy3, Cy5
Label protocol Standard Illumina protocol
Hybridization protocol Bisulfite-converted DNA was fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip Kit according to manfacturer's manual
Scan protocol Polymer-coated chips were image-processed in Illumina's iScan scanner
Description PR01-009_6285617054_R01C01
Data processing Data were extracted using Methylation Module of GenomeStudio v1.0 Software. Illumina probe type was corrected using the Beta2M function in the wateRmelon package in R.
FinalReport_zkaminsky_PPD_GEO.txt contains Unmethylated and methylated signal intensities
Submission date Feb 06, 2013
Last update date May 24, 2013
Contact name Jerry Guintivano
Organization name Johns Hopkins University
Street address 720 Rutland Avenue, Ross 1068
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
Platform ID GPL13534
Series (1)
GSE44132 Antenatal Blood DNA Methylation Profiles

Data table header descriptions
VALUE Normalized Beta Values

Data table
cg00000029 0.549376114081996
cg00000108 0.952550679438628
cg00000109 0.875173370319001
cg00000165 0.267843819945287
cg00000236 0.750703093611892
cg00000289 0.674586338565974
cg00000292 0.831097384422353
cg00000321 0.298603778012437
cg00000363 0.404168589447777
cg00000622 0.0410786111638665
cg00000658 0.840317642556448
cg00000714 0.211998601328738
cg00000721 0.923613312202853
cg00000734 0.0937909352894944
cg00000769 0.0820349028472946
cg00000807 0.84757733369833
cg00000884 0.835200827443544
cg00000905 0.0812330764424078
cg00000924 0.540480251935442
cg00000948 0.876348854397635

Total number of rows: 483266

Table truncated, full table size 13734 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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